Hayne was given conditional bail and is due to appear at Burwood Local Court on December 10.
The 30-year-old was arrested by members of the NSW Sex Crimes Squad in relation to an investigation of a sexual assault allegation made against the out-of-contract NRL star.
During the intercourse the woman claims she "withdrew her consent", a police source said.
'The Child Abuse and Sex Crimes Squad is comprised of detectives who are specially trained to investigate matters against children and adults, including sexual assault, serious physical abuse, and extreme cases of neglect'.
Hayne played eight games for the 49ers in 2015, trying to make the conversion from rugby to the NFL.
Police allege the assault of the 26-year-old woman took place in a Hunter region home on September 30.
He has strongly denied the allegations.
"Let me start by saying I know there will be some questions about Jarryd Hayne", Greenberg said.
Ocasio-Cortez Calls on Progressives to 'Primary' Centrist Democrats — LURCHING LEFT
I would love to see new, younger leadership, but I don't want new leadership that's more conservative", she added. Ocasio-Cortez also admitted as a woman of color running, you get opinions from others from all sides.
Jarryd Hayne allegedly bit his victim.
A Parramatta spokesman told the Australian Broadcasting Corp. that the club would not comment because it was a court matter. Police investigated the incident but decided not to charge Hayne.
Hayne signs a three-year deal with the San Francisco 49ers in California.
Hayne is now a free agent having left the Parramatta Eels at the end of the season.
He then returned to the NRL after a failed attempt to join Fiji's Rugby Sevens team at the Rio Olympics, playing for the Gold Coast Titans.
Hayne is also facing a civil suit in the United States, after being accused of rape.
It comes a week after news broke the two-time Dally M award victor was being investigated over claims he sexually assaulted a 26-year-old woman on grand final night.